Online Data
Bronner
GN, Mynhardt S, Bennett NC, Cohen L, Crumpton N, Hofreiter M,
Arnold P, Asher RJ. 2023 In Press. Phylogenetic History of Golden
Moles and Tenrecs (Mammalia, Afrotheria). Zoological
Journal of the Linnean Society.
Appendix S1. Methods for
collecting molecular data.
Appendix S2. DNA
alignments, indel and morphological characters.
Figure S1. Timetree.
Our morphological dataset is graphically
documented and available via our morphobank project
page.
Supplementary appendices for Asher
& Smith 2022, Phylogenetic Signal and Bias in
Paleontology, Systematic
Biology 71(4): 986–1008.
Supplementary figures
(S1-S8), tables (S1-S5), appendices (S1-S3), archived as per
Syst Biol policy on zenodo.org
Appendices S4
(all) & S5 (strict consensus) artificial extinction MPTs,
archived as per Syst Biol policy on datadryad.org
Errata
for Rankin et al. 2020, 'Anatomical sciuromorphy in
"protrogomorph" rodents'. Palaeontologica Electronica
23(2):a25. https://doi.org/10.26879/1049.
Nine-banded armadillo (Dasypus
novemcinctus) time-series
temperature data (and other supplementary data) from
Knight, F., Connor, C., Venkataramanan, R., & Asher, R. Body
temperatures, life history, and skeletal morphology in the
nine-banded armadillo (Dasypus novemcinctus). Peer
Community In Ecology https://doi.org/10.17863/CAM.50971.
Supplementary data available at the Center for Open Science:
Appendix S1 ("appendS1.csv"): csv file with
original timeseries and temperatures for each individual.
Appendix S2 ("appendS2.txt"): R script to
calculate DFTs from temperature data. Raw data are available in
supplementary appendix S1 and are represented as data frame
"temps".
Appendix S3 ("appendS2.pdf"): graphical summary
of recorded temperatures for each individual, daily range of
temperature fluctuations, and DFT periodograms.
Table S1
("knight-asher_supplementaryTables.doc"): Summary of temperature
data for 19 D. novemcinctus individuals (original data in csv
format in Appendix S1)
Table S2
("knight-asher_supplementaryTables.doc"): Vertebral
counts of D. novemcinctus offspring.
Data for Asher, Smith, Rankin &
Emry 2019, Congruence, fossils, and the evolutionary tree of
rodents and lagomorphs. Royal Society Open
Science.
appendices
S1-S4 are downloadable as an archive with DNA alignment,
indels, combined data matrix, and hypothetical ancestors in nexus
format.
supplementary figures
S1-S7
supplementary methods
and tables S1-S4
illustrated character matrix on morphobank
Topologies from Appendix 1 of Asher RJ. 2018.
Taxonomy, Trees, and Truth in Historical Mammalogy. pp. 39-58 in
Zachos F and Asher RJ. Handbook of
Zoology: Mammalia. Berlin: Walter deGruyter.
Pre-production (and post peer-review) version is available here.
Morphological
character matrices from Carrillo J, Asher RJ. 2017. An
exceptionally well preserved skeleton of Thomashuxleya externa
(Mammalia, Notoungulata), from the Eocene of Patagonia, Argentina.
Paleontologica
Electronica 20.2.34A.
Table
with links to hyracoid CT scans (including DOIs for scans
accessioned at morphosource)
from Asher et al. 2017, J Vert
Paleo
Primate artificial extinction datasets
from Pattinson et al. 2015, Syst
Biol.
Alignment of cytochrome B dataset from chapter 9 of
Asher 2012 Evolution
& Belief
Corrected
sloth clade in Fig 1 from Asher et al. 2011.Variability and
constraint in the mammalian vertebral column. Journal of
Evolutionary Biology 24(5): 1080-1090.
Images documenting the chrysochlorid
morphological
dataset and chrysochlorid
GHR-morphology alignment from Asher et al. 2010 BMC
Evolutionary Biology 10:69 (see also "electronic
supplementary material" heading on BMC
site for further online data).
Vertebral data
from Asher et al. 2009 Bioessays 31(8): 853-864.
Morphological image
database from Asher 2007 BMC Evolutionary Biology 7:108.
Tenrecid
nexus files, supplementary
tables & figures (7MB), and zipped
data folder (98MB) from Asher and Hofreiter 2006 Systematic
Biology 55(2): 181-194.
Gomphos
dataset from Asher et al. 2005 Science 307: 1091-1094.
Erratum
from Asher RJ. 2005. Insectivoran-Grade Placental mammals:
Character Evolution and Fossil History. pp. 50-70 in The Rise of Placental Mammals: Origin and
Relationships of the Major Clades. K.D. Rose and J.D.
Archibald (eds.), Johns Hopkins University Press.
Corrected
Fig. 9A from Asher RJ, Emry RJ, and McKenna MC. 2005. New
material of Centetodon (Mammalia, Lipotyphla) and the
importance of (missing) DNA sequences in systematic paleontology.
Journal of Vertebrate Paleontology 25(4):911–923.
Marsupial
dataset from Asher et al. 2004 MPE 33: 240-250.
Morphological
dataset for Apternodus and other N. American fossils, from
Asher et al., 2002, Bulletin AMNH vol. 243.